3D structure

PDB id
6I7O (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
Length
30 nucleotides
Bulged bases
6I7O|1|BQ|A|3172, 6I7O|1|BQ|G|3173, 6I7O|1|BQ|A|3215, 6I7O|1|BQ|G|3216, 6I7O|1|BQ|G|3219, 6I7O|1|BQ|A|3268, 6I7O|1|BQ|U|3270, 6I7O|1|BQ|C|3272
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6I7O_081 not in the Motif Atlas
Homologous match to J3_8P9A_064
Geometric discrepancy: 0.1915
The information below is about J3_8P9A_064
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_03190.1
Basepair signature
cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
Number of instances in this motif group
1

Unit IDs

6I7O|1|BQ|U|3171
6I7O|1|BQ|A|3172
6I7O|1|BQ|G|3173
6I7O|1|BQ|A|3174
6I7O|1|BQ|U|3175
6I7O|1|BQ|G|3176
*
6I7O|1|BQ|C|3212
6I7O|1|BQ|A|3213
6I7O|1|BQ|U|3214
6I7O|1|BQ|A|3215
6I7O|1|BQ|G|3216
6I7O|1|BQ|C|3217
6I7O|1|BQ|A|3218
6I7O|1|BQ|G|3219
6I7O|1|BQ|G|3220
*
6I7O|1|BQ|C|3265
6I7O|1|BQ|G|3266
6I7O|1|BQ|A|3267
6I7O|1|BQ|A|3268
6I7O|1|BQ|U|3269
6I7O|1|BQ|U|3270
6I7O|1|BQ|G|3271
6I7O|1|BQ|C|3272
6I7O|1|BQ|A|3273
6I7O|1|BQ|A|3274
6I7O|1|BQ|U|3275
6I7O|1|BQ|G|3276
6I7O|1|BQ|U|3277
6I7O|1|BQ|C|3278
6I7O|1|BQ|A|3279

Current chains

Chain BQ
25S ribosomal RNA

Nearby chains

Chain AM
60S ribosomal protein L14-A
Chain AU
60S ribosomal protein L16-A
Chain AX
60S ribosomal protein L17-A
Chain BK
60S ribosomal protein L33-A
Chain BM
60S ribosomal protein L6-A

Coloring options:


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