J3_6I7O_084
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6I7O|1|YQ|U|343, 6I7O|1|YQ|A|351, 6I7O|1|YS|U|23
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_084 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0723
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6I7O|1|YQ|C|340
6I7O|1|YQ|G|341
6I7O|1|YQ|A|342
6I7O|1|YQ|U|343
6I7O|1|YQ|A|344
6I7O|1|YQ|G|345
6I7O|1|YQ|C|346
6I7O|1|YQ|G|347
6I7O|1|YQ|A|348
6I7O|1|YQ|A|349
6I7O|1|YQ|C|350
6I7O|1|YQ|A|351
6I7O|1|YQ|A|352
6I7O|1|YQ|G|353
6I7O|1|YQ|U|354
6I7O|1|YQ|A|355
6I7O|1|YQ|C|356
*
6I7O|1|YQ|G|363
6I7O|1|YQ|G|364
6I7O|1|YQ|A|365
6I7O|1|YQ|A|366
6I7O|1|YQ|A|367
6I7O|1|YQ|G|368
*
6I7O|1|YS|C|21
6I7O|1|YS|U|22
6I7O|1|YS|U|23
6I7O|1|YS|G|24
Current chains
- Chain YQ
- 25S ribosomal RNA
- Chain YS
- 5.8S ribosomal RNA
Nearby chains
- Chain XF
- 60S ribosomal protein L37-A
- Chain XK
- 60S ribosomal protein L26-A
- Chain XL
- 60S ribosomal protein L39
- Chain YE
- 60S ribosomal protein L4-A
Coloring options: