J3_6I7O_086
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 6I7O|1|YQ|U|1554, 6I7O|1|YQ|C|1556, 6I7O|1|YQ|A|1558, 6I7O|1|YQ|C|1581, 6I7O|1|YQ|C|1582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6I7O|1|YQ|A|1537
6I7O|1|YQ|G|1538
6I7O|1|YQ|A|1539
6I7O|1|YQ|U|1540
6I7O|1|YQ|G|1541
6I7O|1|YQ|G|1542
*
6I7O|1|YQ|C|1551
6I7O|1|YQ|G|1552
6I7O|1|YQ|U|1553
6I7O|1|YQ|U|1554
6I7O|1|YQ|U|1555
6I7O|1|YQ|C|1556
6I7O|1|YQ|A|1557
6I7O|1|YQ|A|1558
6I7O|1|YQ|A|1559
6I7O|1|YQ|G|1560
*
6I7O|1|YQ|C|1579
6I7O|1|YQ|A|1580
6I7O|1|YQ|C|1581
6I7O|1|YQ|C|1582
6I7O|1|YQ|A|1583
6I7O|1|YQ|U|1584
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XA
- 60S ribosomal protein L8-A
- Chain XF
- 60S ribosomal protein L37-A
- Chain XH
- 60S ribosomal protein L25
- Chain XQ
- 60S ribosomal protein L15-A
- Chain XW
- 60S ribosomal protein L2-A
- Chain YS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: