J3_6I7V_081

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6I7V|1|CA|A|504, 6I7V|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7V_081 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.1447

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6I7V|1|CA|G|30
6I7V|1|CA|C|31
*
6I7V|1|CA|G|474
6I7V|1|CA|C|475
6I7V|1|CA|G|476
6I7V|1|CA|A|477
6I7V|1|CA|A|478
6I7V|1|CA|A|479
6I7V|1|CA|A|480
6I7V|1|CA|G|481
6I7V|1|CA|A|482
6I7V|1|CA|A|483
6I7V|1|CA|C|484
*
6I7V|1|CA|G|496
6I7V|1|CA|A|497
6I7V|1|CA|G|498
6I7V|1|CA|U|499
6I7V|1|CA|G|500
6I7V|1|CA|A|501
6I7V|1|CA|A|502
6I7V|1|CA|A|503
6I7V|1|CA|A|504
6I7V|1|CA|A|505
6I7V|1|CA|G|506
6I7V|1|CA|A|507
6I7V|1|CA|A|508
6I7V|1|CA|C|509
6I7V|1|CA|C|510

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain CR

50S ribosomal protein L20

Chain CT

50S ribosomal protein L22

Chain CV

50S ribosomal protein L24