J3_6ID1_001
3D structure
- PDB id
- 6ID1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CAU*ACGCAAAUUC*GGCCUUUUGG
- Length
- 23 nucleotides
- Bulged bases
- 6ID1|1|F|C|79, 6ID1|1|F|C|81, 6ID1|1|F|A|84, 6ID1|1|F|U|85, 6ID1|1|F|U|86, 6ID1|1|H|U|15, 6ID1|1|H|U|17, 6ID1|1|H|U|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ID1|1|F|C|55
6ID1|1|F|A|56
6ID1|1|F|U|57
*
6ID1|1|F|A|78
6ID1|1|F|C|79
6ID1|1|F|G|80
6ID1|1|F|C|81
6ID1|1|F|A|82
6ID1|1|F|A|83
6ID1|1|F|A|84
6ID1|1|F|U|85
6ID1|1|F|U|86
6ID1|1|F|C|87
*
6ID1|1|H|G|11
6ID1|1|H|G|12
6ID1|1|H|C|13
6ID1|1|H|C|14
6ID1|1|H|U|15
6ID1|1|H|U|16
6ID1|1|H|U|17
6ID1|1|H|U|18
6ID1|1|H|G|19
6ID1|1|H|G|20
Current chains
- Chain F
- U6snRNA
- Chain H
- U2snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain J
- Crooked neck-like protein 1
- Chain L
- Cell division cycle 5-like protein
- Chain M
- Pre-mRNA-splicing factor SYF2
- Chain P
- Spliceosome-associated protein CWC15 homolog
- Chain R
- SNW domain-containing protein 1
- Chain T
- Pleiotropic regulator 1
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