J3_6IP5_024

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAAUUUG*CGGGAAACCUCAC*GGCUG

Length

27 nucleotides

Bulged bases

6IP5|1|2m|A|1240, 6IP5|1|2m|G|1256, 6IP5|1|2m|A|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|2m|C|1237
6IP5|1|2m|U|1238
6IP5|1|2m|U|1239
6IP5|1|2m|A|1240
6IP5|1|2m|A|1241
6IP5|1|2m|U|1242
6IP5|1|2m|U|1243
6IP5|1|2m|U|1244
6IP5|1|2m|G|1245
*
6IP5|1|2m|C|1254
6IP5|1|2m|G|1255
6IP5|1|2m|G|1256
6IP5|1|2m|G|1257
6IP5|1|2m|A|1258
6IP5|1|2m|A|1259
6IP5|1|2m|A|1260
6IP5|1|2m|C|1261
6IP5|1|2m|C|1262
6IP5|1|2m|U|1263
6IP5|1|2m|C|1264
6IP5|1|2m|A|1265
6IP5|1|2m|C|1266
*
6IP5|1|2m|G|1516
6IP5|1|2m|G|1517
6IP5|1|2m|C|1518
6IP5|1|2m|U|1519
6IP5|1|2m|G|1520

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 21

40S ribosomal protein S20

Chain 2w

40S ribosomal protein S15

Chain 2x

40S ribosomal protein S16

Chain 2z

40S ribosomal protein S18

Chain 3E

40S ribosomal protein S29