J3_6IP5_034

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGAUG*CAGU*AGGGUGUAAAUCUC

Length

25 nucleotides

Bulged bases

6IP5|1|1A|U|2554, 6IP5|1|1A|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP5|1|1A|G|2549
6IP5|1|1A|G|2550
6IP5|1|1A|A|2551
6IP5|1|1A|G|2552
6IP5|1|1A|A|2553
6IP5|1|1A|U|2554
6IP5|1|1A|G|2555
*
6IP5|1|1A|C|2572
6IP5|1|1A|A|2573
6IP5|1|1A|G|2574
6IP5|1|1A|U|2575
*
6IP5|1|1A|A|2757
6IP5|1|1A|G|2758
6IP5|1|1A|G|2759
6IP5|1|1A|G|2760
6IP5|1|1A|U|2761
6IP5|1|1A|G|2762
6IP5|1|1A|U|2763
6IP5|1|1A|A|2764
6IP5|1|1A|A|2765
6IP5|1|1A|A|2766
6IP5|1|1A|U|2767
6IP5|1|1A|C|2768
6IP5|1|1A|U|2769
6IP5|1|1A|C|2770

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2T

60S ribosomal protein L27

Chain 2a

60S ribosomal protein L34