J3_6IP6_013

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

6IP6|1|1A|A|5061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|C|4970
6IP6|1|1A|A|4971
6IP6|1|1A|U|4972
*
6IP6|1|1A|G|4986
6IP6|1|1A|C|4987
6IP6|1|1A|U|4988
6IP6|1|1A|U|4989
6IP6|1|1A|C|4990
6IP6|1|1A|U|4991
*
6IP6|1|1A|A|5060
6IP6|1|1A|A|5061
6IP6|1|1A|G|5062
6IP6|1|1A|G|5063

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2J

60S ribosomal protein L17

Chain 2X

60S ribosomal protein L31