J3_6IP6_023
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 6IP6|1|2m|G|1256, 6IP6|1|2m|A|1258
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP6_023 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.595
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6IP6|1|2m|C|1237
6IP6|1|2m|U|1238
6IP6|1|2m|U|1239
6IP6|1|2m|A|1240
6IP6|1|2m|A|1241
6IP6|1|2m|U|1242
6IP6|1|2m|U|1243
6IP6|1|2m|U|1244
6IP6|1|2m|G|1245
*
6IP6|1|2m|C|1254
6IP6|1|2m|G|1255
6IP6|1|2m|G|1256
6IP6|1|2m|G|1257
6IP6|1|2m|A|1258
6IP6|1|2m|A|1259
6IP6|1|2m|A|1260
6IP6|1|2m|C|1261
6IP6|1|2m|C|1262
6IP6|1|2m|U|1263
6IP6|1|2m|C|1264
6IP6|1|2m|A|1265
6IP6|1|2m|C|1266
*
6IP6|1|2m|G|1516
6IP6|1|2m|G|1517
6IP6|1|2m|C|1518
6IP6|1|2m|U|1519
6IP6|1|2m|G|1520
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S20
- Chain 2w
- 40S ribosomal protein S15
- Chain 2x
- 40S ribosomal protein S16
- Chain 2z
- 40S ribosomal protein S18
- Chain 3E
- 40S ribosomal protein S29
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