J3_6IP6_034

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAGAUG*CAGU*AGGGUGUAAAUCUC

Length

25 nucleotides

Bulged bases

6IP6|1|1A|C|2768, 6IP6|1|1A|U|2769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|G|2549
6IP6|1|1A|G|2550
6IP6|1|1A|A|2551
6IP6|1|1A|G|2552
6IP6|1|1A|A|2553
6IP6|1|1A|U|2554
6IP6|1|1A|G|2555
*
6IP6|1|1A|C|2572
6IP6|1|1A|A|2573
6IP6|1|1A|G|2574
6IP6|1|1A|U|2575
*
6IP6|1|1A|A|2757
6IP6|1|1A|G|2758
6IP6|1|1A|G|2759
6IP6|1|1A|G|2760
6IP6|1|1A|U|2761
6IP6|1|1A|G|2762
6IP6|1|1A|U|2763
6IP6|1|1A|A|2764
6IP6|1|1A|A|2765
6IP6|1|1A|A|2766
6IP6|1|1A|U|2767
6IP6|1|1A|C|2768
6IP6|1|1A|U|2769
6IP6|1|1A|C|2770

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2T

60S ribosomal protein L27

Chain 2a

60S ribosomal protein L34