J3_6IP6_036
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC
- Length
- 29 nucleotides
- Bulged bases
- 6IP6|1|1A|C|4114, 6IP6|1|1A|G|4115, 6IP6|1|1A|C|4116, 6IP6|1|1A|U|4117, 6IP6|1|1A|U|4118, 6IP6|1|1A|G|4121
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP6|1|1A|G|4091
6IP6|1|1A|G|4092
6IP6|1|1A|G|4093
6IP6|1|1A|G|4094
6IP6|1|1A|G|4095
6IP6|1|1A|C|4096
6IP6|1|1A|G|4097
*
6IP6|1|1A|C|4112
6IP6|1|1A|U|4113
6IP6|1|1A|C|4114
6IP6|1|1A|G|4115
6IP6|1|1A|C|4116
6IP6|1|1A|U|4117
6IP6|1|1A|U|4118
6IP6|1|1A|C|4119
6IP6|1|1A|U|4120
6IP6|1|1A|G|4121
6IP6|1|1A|G|4122
6IP6|1|1A|C|4123
6IP6|1|1A|G|4124
6IP6|1|1A|C|4125
6IP6|1|1A|C|4126
6IP6|1|1A|A|4127
6IP6|1|1A|A|4128
6IP6|1|1A|G|4129
*
6IP6|1|1A|C|4155
6IP6|1|1A|G|4156
6IP6|1|1A|A|4157
6IP6|1|1A|C|4158
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2B
- 60S ribosomal protein L7a
- Chain 2T
- 60S ribosomal protein L27
- Chain 2W
- 60S ribosomal protein L30
- Chain 2a
- 60S ribosomal protein L34
- Chain 2j
- 60S ribosomal protein L37a
Coloring options: