J3_6IP8_003
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG
- Length
- 31 nucleotides
- Bulged bases
- 6IP8|1|1A|C|962, 6IP8|1|1A|C|967, 6IP8|1|1A|C|968, 6IP8|1|1A|C|969, 6IP8|1|1A|U|971, 6IP8|1|1A|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|C|712
6IP8|1|1A|C|713
*
6IP8|1|1A|G|955
6IP8|1|1A|A|956
6IP8|1|1A|G|957
6IP8|1|1A|G|958
6IP8|1|1A|G|959
6IP8|1|1A|A|960
6IP8|1|1A|G|961
6IP8|1|1A|C|962
6IP8|1|1A|G|963
6IP8|1|1A|A|964
6IP8|1|1A|G|965
6IP8|1|1A|A|966
6IP8|1|1A|C|967
6IP8|1|1A|C|968
6IP8|1|1A|C|969
6IP8|1|1A|G|970
6IP8|1|1A|U|971
6IP8|1|1A|C|972
6IP8|1|1A|G|973
6IP8|1|1A|C|974
6IP8|1|1A|C|975
6IP8|1|1A|G|976
*
6IP8|1|1A|C|1278
6IP8|1|1A|A|1279
6IP8|1|1A|C|1280
6IP8|1|1A|G|1281
6IP8|1|1A|G|1282
6IP8|1|1A|G|1283
6IP8|1|1A|G|1284
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 1H
- 60S ribosomal protein L6
- Chain 2A
- 60S ribosomal protein L7
- Chain 2Y
- 60S ribosomal protein L32
Coloring options: