J3_6IP8_010

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGAUG*CAGU*AGGGUGUAAAUCUC

Length

25 nucleotides

Bulged bases

6IP8|1|1A|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|G|2549
6IP8|1|1A|G|2550
6IP8|1|1A|A|2551
6IP8|1|1A|G|2552
6IP8|1|1A|A|2553
6IP8|1|1A|U|2554
6IP8|1|1A|G|2555
*
6IP8|1|1A|C|2572
6IP8|1|1A|A|2573
6IP8|1|1A|G|2574
6IP8|1|1A|U|2575
*
6IP8|1|1A|A|2757
6IP8|1|1A|G|2758
6IP8|1|1A|G|2759
6IP8|1|1A|G|2760
6IP8|1|1A|U|2761
6IP8|1|1A|G|2762
6IP8|1|1A|U|2763
6IP8|1|1A|A|2764
6IP8|1|1A|A|2765
6IP8|1|1A|A|2766
6IP8|1|1A|U|2767
6IP8|1|1A|C|2768
6IP8|1|1A|U|2769
6IP8|1|1A|C|2770

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2T

60S ribosomal protein L27

Chain 2a

60S ribosomal protein L34