J3_6IP8_015

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

6IP8|1|1A|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|C|4970
6IP8|1|1A|A|4971
6IP8|1|1A|U|4972
*
6IP8|1|1A|G|4986
6IP8|1|1A|C|4987
6IP8|1|1A|U|4988
6IP8|1|1A|U|4989
6IP8|1|1A|C|4990
6IP8|1|1A|U|4991
*
6IP8|1|1A|A|5060
6IP8|1|1A|A|5061
6IP8|1|1A|G|5062
6IP8|1|1A|G|5063

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2J

60S ribosomal protein L17

Chain 2X

60S ribosomal protein L31