J3_6IP8_016

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAUAC*GGC*GUG

Length

12 nucleotides

Bulged bases

6IP8|1|1B|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1B|C|9
6IP8|1|1B|C|10
6IP8|1|1B|A|11
6IP8|1|1B|U|12
6IP8|1|1B|A|13
6IP8|1|1B|C|14
*
6IP8|1|1B|G|65
6IP8|1|1B|G|66
6IP8|1|1B|C|67
*
6IP8|1|1B|G|108
6IP8|1|1B|U|109
6IP8|1|1B|G|110

Current chains

Chain 1B

5S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

60S ribosomal protein L5

Chain 2D

60S ribosomal protein L10-like

Chain 2N

60S ribosomal protein L21