J3_6IP8_019
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGGA*UUAAGA*UA
- Length
- 12 nucleotides
- Bulged bases
- 6IP8|1|2m|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|2m|U|682
6IP8|1|2m|G|683
6IP8|1|2m|G|684
6IP8|1|2m|A|685
*
6IP8|1|2m|U|917
6IP8|1|2m|U|918
6IP8|1|2m|A|919
6IP8|1|2m|A|920
6IP8|1|2m|G|921
6IP8|1|2m|A|922
*
6IP8|1|2m|U|1022
6IP8|1|2m|A|1023
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2s
- 40S ribosomal protein S7
- Chain 2v
- 40S ribosomal protein S11
- Chain 3B
- 40S ribosomal protein S23
- Chain 3K
- 40S ribosomal protein S13
- Chain 3M
- 40S ribosomal protein S15a
- Chain 3P
- 40S ribosomal protein S27
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