J3_6IP8_021
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6IP8|1|2m|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP8_021 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1288
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6IP8|1|2m|A|938
6IP8|1|2m|U|939
6IP8|1|2m|U|940
6IP8|1|2m|C|941
*
6IP8|1|2m|G|985
6IP8|1|2m|G|986
6IP8|1|2m|A|987
6IP8|1|2m|C|988
6IP8|1|2m|C|989
6IP8|1|2m|A|990
6IP8|1|2m|G|991
6IP8|1|2m|A|992
6IP8|1|2m|G|993
*
6IP8|1|2m|C|1000
6IP8|1|2m|A|1001
6IP8|1|2m|U|1002
6IP8|1|2m|U|1003
6IP8|1|2m|U|1004
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2j
- 60S ribosomal protein L37a
- Chain 2o
- 40S ribosomal protein S3a
- Chain 3C
- 40S ribosomal protein S26
- Chain 3K
- 40S ribosomal protein S13
- Chain 3L
- 40S ribosomal protein S14
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