J3_6IP8_031

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCG*CGUACGG*CCCGG

Length

17 nucleotides

Bulged bases

6IP8|1|1A|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|C|112
6IP8|1|1A|A|113
6IP8|1|1A|G|114
6IP8|1|1A|C|115
6IP8|1|1A|G|116
*
6IP8|1|1A|C|155
6IP8|1|1A|G|156
6IP8|1|1A|U|157
6IP8|1|1A|A|158
6IP8|1|1A|C|159
6IP8|1|1A|G|160
6IP8|1|1A|G|161
*
6IP8|1|1A|C|274
6IP8|1|1A|C|275
6IP8|1|1A|C|276
6IP8|1|1A|G|277
6IP8|1|1A|G|278

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2B

60S ribosomal protein L7a

Chain 2F

60S ribosomal protein L13

Chain 2H

60S ribosomal protein L15

Chain 2b

60S ribosomal protein L35

Chain 2c

60S ribosomal protein L36