J3_6IP8_032
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAUAGUCAACAAGUACC*GGGAAAG*CUCG
- Length
- 29 nucleotides
- Bulged bases
- 6IP8|1|1A|U|354, 6IP8|1|1A|A|362, 6IP8|1|1C|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|C|351
6IP8|1|1A|G|352
6IP8|1|1A|A|353
6IP8|1|1A|U|354
6IP8|1|1A|A|355
6IP8|1|1A|G|356
6IP8|1|1A|U|357
6IP8|1|1A|C|358
6IP8|1|1A|A|359
6IP8|1|1A|A|360
6IP8|1|1A|C|361
6IP8|1|1A|A|362
6IP8|1|1A|A|363
6IP8|1|1A|G|364
6IP8|1|1A|U|365
6IP8|1|1A|A|366
6IP8|1|1A|C|367
6IP8|1|1A|C|368
*
6IP8|1|1A|G|373
6IP8|1|1A|G|374
6IP8|1|1A|G|375
6IP8|1|1A|A|376
6IP8|1|1A|A|377
6IP8|1|1A|A|378
6IP8|1|1A|G|379
*
6IP8|1|1C|C|21
6IP8|1|1C|U|22
6IP8|1|1C|C|23
6IP8|1|1C|G|24
Current chains
- Chain 1A
- 28S ribosomal RNA
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2S
- 60S ribosomal protein L26
- Chain 2d
- 60S ribosomal protein L37
- Chain 2f
- 60S ribosomal protein L39
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