J3_6IP8_044
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 6IP8|1|2m|A|1454, 6IP8|1|2m|A|1476, 6IP8|1|2m|U|1477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|2m|C|1391
6IP8|1|2m|U|1392
6IP8|1|2m|G|1393
6IP8|1|2m|G|1394
6IP8|1|2m|C|1395
*
6IP8|1|2m|G|1450
6IP8|1|2m|G|1451
6IP8|1|2m|A|1452
6IP8|1|2m|C|1453
6IP8|1|2m|A|1454
6IP8|1|2m|A|1455
6IP8|1|2m|G|1456
*
6IP8|1|2m|C|1470
6IP8|1|2m|C|1471
6IP8|1|2m|C|1472
6IP8|1|2m|G|1473
6IP8|1|2m|A|1474
6IP8|1|2m|G|1475
6IP8|1|2m|A|1476
6IP8|1|2m|U|1477
6IP8|1|2m|U|1478
6IP8|1|2m|G|1479
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S20
- Chain 2p
- 40S ribosomal protein S3
- Chain 2r
- 40S ribosomal protein S5
- Chain 2x
- 40S ribosomal protein S16
- Chain 2y
- 40S ribosomal protein S17
- Chain 3D
- 40S ribosomal protein S28
- Chain 3E
- 40S ribosomal protein S29
- Chain 3F
- Receptor of activated protein C kinase 1
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