Loop J3_6IP8

3D structure

PDB id: 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: UCGGUUG*CCUUCGUCCUGG*CGUCACGCACCGCACGUUCGUG
Length: 41 nucleotides
Bulged bases: 6IP8|1|1A|C|4883, 6IP8|1|1A|A|4938, 6IP8|1|1A|C|4940, 6IP8|1|1A|A|4943, 6IP8|1|1A|C|4944, 6IP8|1|1A|U|4950
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6IP8|1|1A|U|4748
6IP8|1|1A|C|4749
6IP8|1|1A|G|4750
6IP8|1|1A|G|4751
6IP8|1|1A|U|4752
6IP8|1|1A|U|4753
6IP8|1|1A|G|4754
*
6IP8|1|1A|C|4879
6IP8|1|1A|C|4880
6IP8|1|1A|U|4881
6IP8|1|1A|U|4882
6IP8|1|1A|C|4883
6IP8|1|1A|G|4884
6IP8|1|1A|U|4885
6IP8|1|1A|C|4886
6IP8|1|1A|C|4887
6IP8|1|1A|U|4888
6IP8|1|1A|G|4889
6IP8|1|1A|G|4890
*
6IP8|1|1A|C|4930
6IP8|1|1A|G|4931
6IP8|1|1A|U|4932
6IP8|1|1A|C|4933
6IP8|1|1A|A|4934
6IP8|1|1A|C|4935
6IP8|1|1A|G|4936
6IP8|1|1A|C|4937
6IP8|1|1A|A|4938
6IP8|1|1A|C|4939
6IP8|1|1A|C|4940
6IP8|1|1A|G|4941
6IP8|1|1A|C|4942
6IP8|1|1A|A|4943
6IP8|1|1A|C|4944
6IP8|1|1A|G|4945
6IP8|1|1A|U|4946
6IP8|1|1A|U|4947
6IP8|1|1A|C|4948
6IP8|1|1A|G|4949
6IP8|1|1A|U|4950
6IP8|1|1A|G|4951

Current chains

Chain 1A: 28S ribosomal RNA

Nearby chains

Chain 1H: 60S ribosomal protein L6
Chain 2G: 60S ribosomal protein L14
Chain 2I: 60S ribosomal protein L13a
Chain 2Z: 60S ribosomal protein L35a

J3_6IP8_045