J3_6JQ5_001

3D structure

PDB id

6JQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of Hatchet Ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

2.06 Å

Loop

Sequence

GUGGG*CAGA*UUAAAACC

Length

17 nucleotides

Bulged bases

6JQ5|1|A|G|66, 6JQ5|1|B|C|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58453.1

Basepair signature

cWW-cWH-F-cWW-tWS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6JQ5|1|A|G|27
6JQ5|1|A|U|28
6JQ5|1|A|G|29
6JQ5|1|A|G|30
6JQ5|1|A|G|31
*
6JQ5|1|A|C|64
6JQ5|1|A|A|65
6JQ5|1|A|G|66
6JQ5|1|A|A|67
*
6JQ5|1|B|U|70
6JQ5|1|B|U|71
6JQ5|1|B|A|72
6JQ5|1|B|A|73
6JQ5|1|B|A|74
6JQ5|1|B|A|75
6JQ5|1|B|C|76
6JQ5|1|B|C|77

Current chains

Chain A

RNA (82-MER)

Chain B

RNA (82-MER)

Nearby chains