J3_6LKQ_002
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUUG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LKQ_002 not in the Motif Atlas
- Homologous match to J3_5J7L_002
- Geometric discrepancy: 0.1357
- The information below is about J3_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6LKQ|1|s|C|586
6LKQ|1|s|G|587
6LKQ|1|s|G|588
*
6LKQ|1|s|C|651
6LKQ|1|s|U|652
6LKQ|1|s|U|653
6LKQ|1|s|G|654
*
6LKQ|1|s|C|754
6LKQ|1|s|G|755
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S8
- Chain K
- 30S ribosomal protein S12
- Chain N
- 30S ribosomal protein S15
- Chain P
- 30S ribosomal protein S17
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