J3_6LKQ_004

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGGAG*CUAC*GGAAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|s|G|942
6LKQ|1|s|U|943
6LKQ|1|s|G|944
6LKQ|1|s|G|945
6LKQ|1|s|A|946
6LKQ|1|s|G|947
*
6LKQ|1|s|C|1234
6LKQ|1|s|U|1235
6LKQ|1|s|A|1236
6LKQ|1|s|C|1237
*
6LKQ|1|s|G|1337
6LKQ|1|s|G|1338
6LKQ|1|s|A|1339
6LKQ|1|s|A|1340
6LKQ|1|s|U|1341

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S7

Chain H

30S ribosomal protein S9

Chain L

30S ribosomal protein S13