J3_6LKQ_005

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAUCC*GAGACAG*CUUACG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|s|C|990
6LKQ|1|s|U|991
6LKQ|1|s|U|992
6LKQ|1|s|G|993
6LKQ|1|s|A|994
6LKQ|1|s|C|995
6LKQ|1|s|A|996
6LKQ|1|s|U|997
6LKQ|1|s|C|998
6LKQ|1|s|C|999
*
6LKQ|1|s|G|1041
6LKQ|1|s|A|1042
6LKQ|1|s|G|1043
6LKQ|1|s|A|1044
6LKQ|1|s|C|1045
6LKQ|1|s|A|1046
6LKQ|1|s|G|1047
*
6LKQ|1|s|C|1210
6LKQ|1|s|U|1211
6LKQ|1|s|U|1212
6LKQ|1|s|A|1213
6LKQ|1|s|C|1214
6LKQ|1|s|G|1215

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S14