J3_6LKQ_013

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6LKQ|1|t|U|686, 6LKQ|1|t|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LKQ_013 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.095

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6LKQ|1|t|U|683
6LKQ|1|t|G|684
6LKQ|1|t|A|685
6LKQ|1|t|U|686
6LKQ|1|t|C|687
6LKQ|1|t|U|688
6LKQ|1|t|A|689
*
6LKQ|1|t|U|773
6LKQ|1|t|G|774
6LKQ|1|t|G|775
*
6LKQ|1|t|C|791
6LKQ|1|t|A|792
6LKQ|1|t|A|793
6LKQ|1|t|A|794

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L2

Chain k

50S ribosomal protein L34