J3_6LKQ_014

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LKQ_014 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0816

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6LKQ|1|t|C|698
6LKQ|1|t|A|699
6LKQ|1|t|G|700
*
6LKQ|1|t|C|732
6LKQ|1|t|G|733
6LKQ|1|t|A|734
6LKQ|1|t|A|735
6LKQ|1|t|C|736
*
6LKQ|1|t|G|760
6LKQ|1|t|A|761
6LKQ|1|t|U|762
6LKQ|1|t|G|763

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L2