J3_6LKQ_015

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAUG*CAUUUAAAGAAA*UCAC

Length

21 nucleotides

Bulged bases

6LKQ|1|t|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|t|G|1055
6LKQ|1|t|G|1056
6LKQ|1|t|A|1057
6LKQ|1|t|U|1058
6LKQ|1|t|G|1059
*
6LKQ|1|t|C|1079
6LKQ|1|t|A|1080
6LKQ|1|t|U|1081
6LKQ|1|t|U|1082
6LKQ|1|t|U|1083
6LKQ|1|t|A|1084
6LKQ|1|t|A|1085
6LKQ|1|t|A|1086
6LKQ|1|t|G|1087
6LKQ|1|t|A|1088
6LKQ|1|t|A|1089
6LKQ|1|t|A|1090
*
6LKQ|1|t|U|1101
6LKQ|1|t|C|1102
6LKQ|1|t|A|1103
6LKQ|1|t|C|1104

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L11

Chain m

50S ribosomal protein L36

Chain n

50S ribosomal protein L10