3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
6LKQ|1|t|U|2334, 6LKQ|1|t|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6LKQ_020 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.1734
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

6LKQ|1|t|C|2295
6LKQ|1|t|U|2296
6LKQ|1|t|A|2297
6LKQ|1|t|A|2298
6LKQ|1|t|U|2299
*
6LKQ|1|t|A|2317
6LKQ|1|t|G|2318
6LKQ|1|t|G|2319
6LKQ|1|t|U|2320
6LKQ|1|t|U|2321
6LKQ|1|t|A|2322
6LKQ|1|t|G|2323
*
6LKQ|1|t|C|2332
6LKQ|1|t|A|2333
6LKQ|1|t|U|2334
6LKQ|1|t|A|2335
6LKQ|1|t|A|2336
6LKQ|1|t|G|2337

Current chains

Chain t
23S ribosomal RNA

Nearby chains

Chain 5
50S ribosomal protein L18
Chain X
50S ribosomal protein L5
Chain e
50S ribosomal protein L27
Chain u
5S ribosomal RNA; 5S rRNA

Coloring options:


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