J3_6LKQ_021

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6LKQ|1|t|A|2518, 6LKQ|1|t|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LKQ_021 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.067

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6LKQ|1|t|C|2517
6LKQ|1|t|A|2518
6LKQ|1|t|U|2519
6LKQ|1|t|C|2520
*
6LKQ|1|t|G|2545
6LKQ|1|t|U|2546
6LKQ|1|t|A|2547
*
6LKQ|1|t|U|2561
6LKQ|1|t|U|2562
6LKQ|1|t|U|2563
6LKQ|1|t|A|2564
6LKQ|1|t|A|2565
6LKQ|1|t|A|2566
6LKQ|1|t|G|2567

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L14

Chain V

50S ribosomal protein L3