J3_6LKQ_038
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAUG*CGUAGUCCGGAUU*AUGAAGUCG
- Length
- 27 nucleotides
- Bulged bases
- 6LKQ|1|s|U|1240, 6LKQ|1|s|C|1302, 6LKQ|1|s|C|1336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LKQ|1|s|C|1237
6LKQ|1|s|A|1238
6LKQ|1|s|A|1239
6LKQ|1|s|U|1240
6LKQ|1|s|G|1241
*
6LKQ|1|s|C|1296
6LKQ|1|s|G|1297
6LKQ|1|s|U|1298
6LKQ|1|s|A|1299
6LKQ|1|s|G|1300
6LKQ|1|s|U|1301
6LKQ|1|s|C|1302
6LKQ|1|s|C|1303
6LKQ|1|s|G|1304
6LKQ|1|s|G|1305
6LKQ|1|s|A|1306
6LKQ|1|s|U|1307
6LKQ|1|s|U|1308
*
6LKQ|1|s|A|1329
6LKQ|1|s|U|1330
6LKQ|1|s|G|1331
6LKQ|1|s|A|1332
6LKQ|1|s|A|1333
6LKQ|1|s|G|1334
6LKQ|1|s|U|1335
6LKQ|1|s|C|1336
6LKQ|1|s|G|1337
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain F
- 30S ribosomal protein S7
- Chain L
- 30S ribosomal protein S13
Coloring options: