J3_6LQM_006

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6LQM|1|2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LQM_006 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0885

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6LQM|1|2|C|2393
6LQM|1|2|G|2394
6LQM|1|2|A|2395
6LQM|1|2|A|2396
6LQM|1|2|G|2397
6LQM|1|2|U|2398
6LQM|1|2|G|2399
*
6LQM|1|2|C|2805
6LQM|1|2|A|2806
6LQM|1|2|A|2807
*
6LQM|1|2|U|2819
6LQM|1|2|C|2820
6LQM|1|2|U|2821
6LQM|1|2|G|2822

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain a

60S ribosomal protein L19