J3_6LQM_023

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

6LQM|1|2|A|1805, 6LQM|1|2|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LQM_023 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4214

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6LQM|1|2|U|1726
6LQM|1|2|U|1727
*
6LQM|1|2|A|1802
6LQM|1|2|G|1803
6LQM|1|2|A|1804
6LQM|1|2|A|1805
6LQM|1|2|G|1806
*
6LQM|1|2|C|1832
6LQM|1|2|G|1833
6LQM|1|2|U|1834
6LQM|1|2|G|1835
6LQM|1|2|G|1836
6LQM|1|2|A|1837

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain c

60S ribosomal protein L21

Chain w

60S ribosomal protein L7