J3_6LQM_025

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LQM_025 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1522

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

6LQM|1|2|A|2598
6LQM|1|2|G|2599
6LQM|1|2|A|2600
6LQM|1|2|A|2601
6LQM|1|2|G|2602
*
6LQM|1|2|C|2737
6LQM|1|2|C|2738
*
6LQM|1|2|G|2742
6LQM|1|2|A|2743
6LQM|1|2|A|2744
6LQM|1|2|A|2745
6LQM|1|2|A|2746
6LQM|1|2|U|2747

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8