J3_6LQQ_003
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6LQQ|1|SA|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LQQ_003 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0942
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6LQQ|1|SA|A|881
6LQQ|1|SA|U|882
6LQQ|1|SA|C|883
6LQQ|1|SA|A|884
*
6LQQ|1|SA|U|928
6LQQ|1|SA|A|929
6LQQ|1|SA|A|930
6LQQ|1|SA|C|931
6LQQ|1|SA|U|932
6LQQ|1|SA|A|933
6LQQ|1|SA|C|934
6LQQ|1|SA|U|935
6LQQ|1|SA|G|936
*
6LQQ|1|SA|C|943
6LQQ|1|SA|A|944
6LQQ|1|SA|U|945
6LQQ|1|SA|U|946
6LQQ|1|SA|U|947
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RC
- KRR1 small subunit processome component
- Chain RV
- Protein FAF1
- Chain SC
- 40S ribosomal protein S1-A
- Chain SO
- 40S ribosomal protein S13
- Chain SP
- 40S ribosomal protein S14-A
Coloring options: