3D structure

PDB id
6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.1 Å

Loop

Sequence
AUCA*UAACUACUG*CAUUU
Length
18 nucleotides
Bulged bases
6LQQ|1|SA|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6LQQ_003 not in the Motif Atlas
Homologous match to J3_4V88_033
Geometric discrepancy: 0.0942
The information below is about J3_4V88_033
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_38616.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

6LQQ|1|SA|A|881
6LQQ|1|SA|U|882
6LQQ|1|SA|C|883
6LQQ|1|SA|A|884
*
6LQQ|1|SA|U|928
6LQQ|1|SA|A|929
6LQQ|1|SA|A|930
6LQQ|1|SA|C|931
6LQQ|1|SA|U|932
6LQQ|1|SA|A|933
6LQQ|1|SA|C|934
6LQQ|1|SA|U|935
6LQQ|1|SA|G|936
*
6LQQ|1|SA|C|943
6LQQ|1|SA|A|944
6LQQ|1|SA|U|945
6LQQ|1|SA|U|946
6LQQ|1|SA|U|947

Current chains

Chain SA
18S pre-rRNA

Nearby chains

Chain RC
KRR1 small subunit processome component
Chain RV
Protein FAF1
Chain SC
40S ribosomal protein S1-A
Chain SO
40S ribosomal protein S13
Chain SP
40S ribosomal protein S14-A

Coloring options:


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