J3_6LQQ_004

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GA*UUG*CCGCC

Length

10 nucleotides

Bulged bases

6LQQ|1|SA|U|1628, 6LQQ|1|SA|C|1639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQQ|1|SA|G|1150
6LQQ|1|SA|A|1151
*
6LQQ|1|SA|U|1627
6LQQ|1|SA|U|1628
6LQQ|1|SA|G|1629
*
6LQQ|1|SA|C|1636
6LQQ|1|SA|C|1637
6LQQ|1|SA|G|1638
6LQQ|1|SA|C|1639
6LQQ|1|SA|C|1640

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5E

U3 small nucleolar RNA-associated protein MPP10

Chain B1

Periodic tryptophan protein 2

Chain B2

U3 small nucleolar RNA-associated protein 12

Chain B3

U3 small nucleolar RNA-associated protein 13

Chain RN

Nucleolar complex protein 14