J3_6LQQ_006

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAGAC*GGGUGG*CUUG

Length

15 nucleotides

Bulged bases

6LQQ|1|SA|G|1218, 6LQQ|1|SA|U|1443

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQQ|1|SA|C|1216
6LQQ|1|SA|A|1217
6LQQ|1|SA|G|1218
6LQQ|1|SA|A|1219
6LQQ|1|SA|C|1220
*
6LQQ|1|SA|G|1263
6LQQ|1|SA|G|1264
6LQQ|1|SA|G|1265
6LQQ|1|SA|U|1266
6LQQ|1|SA|G|1267
6LQQ|1|SA|G|1268
*
6LQQ|1|SA|C|1441
6LQQ|1|SA|U|1442
6LQQ|1|SA|U|1443
6LQQ|1|SA|G|1448

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RG

Ribosomal RNA small subunit methyltransferase NEP1

Chain RN

Nucleolar complex protein 14

Chain RS

Essential nuclear protein 1