J3_6LQR_003

3D structure

PDB id

6LQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

6LQR|1|SA|C|934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LQR_003 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.0942

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6LQR|1|SA|A|881
6LQR|1|SA|U|882
6LQR|1|SA|C|883
6LQR|1|SA|A|884
*
6LQR|1|SA|U|928
6LQR|1|SA|A|929
6LQR|1|SA|A|930
6LQR|1|SA|C|931
6LQR|1|SA|U|932
6LQR|1|SA|A|933
6LQR|1|SA|C|934
6LQR|1|SA|U|935
6LQR|1|SA|G|936
*
6LQR|1|SA|C|943
6LQR|1|SA|A|944
6LQR|1|SA|U|945
6LQR|1|SA|U|946
6LQR|1|SA|U|947

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SC

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S13

Chain SP

40S ribosomal protein S14-A