J3_6LQS_002

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

6LQS|1|SA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LQS_002 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.2105

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6LQS|1|SA|A|881
6LQS|1|SA|U|882
6LQS|1|SA|C|883
6LQS|1|SA|A|884
*
6LQS|1|SA|U|928
6LQS|1|SA|A|929
6LQS|1|SA|A|930
6LQS|1|SA|C|931
6LQS|1|SA|U|932
6LQS|1|SA|A|933
6LQS|1|SA|C|934
6LQS|1|SA|U|935
6LQS|1|SA|G|936
*
6LQS|1|SA|C|943
6LQS|1|SA|A|944
6LQS|1|SA|U|945
6LQS|1|SA|U|946
6LQS|1|SA|U|947

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SC

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S13

Chain SP

40S ribosomal protein S14-A