J3_6LQV_001
3D structure
- PDB id
- 6LQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CAUA*UGCCAGU*AAAGUUGUUGCAGCUGGGGG
- Length
- 31 nucleotides
- Bulged bases
- 6LQV|1|SA|C|18, 6LQV|1|SA|A|19, 6LQV|1|SA|G|20, 6LQV|1|SA|U|608, 6LQV|1|SA|U|609, 6LQV|1|SA|G|610
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LQV|1|3A|C|13
6LQV|1|3A|A|14
6LQV|1|3A|U|15
6LQV|1|3A|A|16
*
6LQV|1|SA|U|15
6LQV|1|SA|G|16
6LQV|1|SA|C|17
6LQV|1|SA|C|18
6LQV|1|SA|A|19
6LQV|1|SA|G|20
6LQV|1|SA|U|21
*
6LQV|1|SA|A|604
6LQV|1|SA|A|605
6LQV|1|SA|A|606
6LQV|1|SA|G|607
6LQV|1|SA|U|608
6LQV|1|SA|U|609
6LQV|1|SA|G|610
6LQV|1|SA|U|611
6LQV|1|SA|U|612
6LQV|1|SA|G|613
6LQV|1|SA|C|614
6LQV|1|SA|A|615
6LQV|1|SA|G|616
6LQV|1|SA|C|1105
6LQV|1|SA|U|1106
6LQV|1|SA|G|1107
6LQV|1|SA|G|1108
6LQV|1|SA|G|1109
6LQV|1|SA|G|1110
6LQV|1|SA|G|1111
Current chains
- Chain 3A
- U3 snoRNA
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5K
- rRNA-processing protein FCF1
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain RN
- Nucleolar complex protein 14
- Chain SK
- 40S ribosomal protein S9-A
- Chain SY
- 40S ribosomal protein S23-A
Coloring options: