J3_6LSR_001

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6LSR|1|2|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|C|112
6LSR|1|2|A|113
6LSR|1|2|G|114
6LSR|1|2|C|115
6LSR|1|2|G|116
*
6LSR|1|2|C|155
6LSR|1|2|G|156
6LSR|1|2|U|157
6LSR|1|2|A|158
6LSR|1|2|C|159
6LSR|1|2|G|160
*
6LSR|1|2|C|275
6LSR|1|2|C|276
6LSR|1|2|G|277
6LSR|1|2|G|278

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain H

60S ribosomal protein L35

Chain K

60S ribosomal protein L36

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15