J3_6LSR_003

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

6LSR|1|2|C|962, 6LSR|1|2|C|967, 6LSR|1|2|C|968, 6LSR|1|2|C|969, 6LSR|1|2|U|971, 6LSR|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|C|712
6LSR|1|2|C|713
*
6LSR|1|2|G|955
6LSR|1|2|A|956
6LSR|1|2|G|957
6LSR|1|2|G|958
6LSR|1|2|G|959
6LSR|1|2|A|960
6LSR|1|2|G|961
6LSR|1|2|C|962
6LSR|1|2|G|963
6LSR|1|2|A|964
6LSR|1|2|G|965
6LSR|1|2|A|966
6LSR|1|2|C|967
6LSR|1|2|C|968
6LSR|1|2|C|969
6LSR|1|2|G|970
6LSR|1|2|U|971
6LSR|1|2|C|972
6LSR|1|2|G|973
6LSR|1|2|C|974
6LSR|1|2|C|975
6LSR|1|2|G|976
*
6LSR|1|2|C|1278
6LSR|1|2|A|1279
6LSR|1|2|C|1280
6LSR|1|2|G|1281
6LSR|1|2|G|1282
6LSR|1|2|G|1283
6LSR|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain t

60S ribosomal protein L32

Chain v

60S ribosomal protein L6

Chain w

60S ribosomal protein L7