J3_6LSR_012

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CUG*CGAAGGUAG*UGAAUG

Length

18 nucleotides

Bulged bases

6LSR|1|2|U|3818

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|C|3696
6LSR|1|2|U|3697
6LSR|1|2|G|3698
*
6LSR|1|2|C|3752
6LSR|1|2|G|3753
6LSR|1|2|A|3774
6LSR|1|2|A|3775
6LSR|1|2|G|3776
6LSR|1|2|G|3777
6LSR|1|2|U|3778
6LSR|1|2|A|3779
6LSR|1|2|G|3780
*
6LSR|1|2|U|3814
6LSR|1|2|G|3815
6LSR|1|2|A|3816
6LSR|1|2|A|3817
6LSR|1|2|U|3818
6LSR|1|2|G|3819

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 1

Large subunit GTPase 1 homolog

Chain 3

60S ribosomal export protein NMD3

Chain m

60S ribosomal protein L8