J3_6LSR_014

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUC*GCCU(5MC)ACGAUCCU*A(OMG)(MHG)UGUC

Length

23 nucleotides

Bulged bases

6LSR|1|2|U|4374

QA status

Modified nucleotides: 5MC, OMG, MHG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|G|4228
6LSR|1|2|U|4229
6LSR|1|2|C|4230
*
6LSR|1|2|G|4331
6LSR|1|2|C|4332
6LSR|1|2|C|4333
6LSR|1|2|U|4334
6LSR|1|2|5MC|4335
6LSR|1|2|A|4336
6LSR|1|2|C|4337
6LSR|1|2|G|4338
6LSR|1|2|A|4339
6LSR|1|2|U|4340
6LSR|1|2|C|4341
6LSR|1|2|C|4342
6LSR|1|2|U|4343
*
6LSR|1|2|A|4369
6LSR|1|2|OMG|4370
6LSR|1|2|MHG|4371
6LSR|1|2|U|4372
6LSR|1|2|G|4373
6LSR|1|2|U|4374
6LSR|1|2|C|4375

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain L

60S ribosomal protein L27a

Chain W

60S ribosomal protein L36a

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21