J3_6LSS_006

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6LSS|1|2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LSS_006 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0901

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6LSS|1|2|C|2393
6LSS|1|2|G|2394
6LSS|1|2|A|2395
6LSS|1|2|A|2396
6LSS|1|2|G|2397
6LSS|1|2|U|2398
6LSS|1|2|G|2399
*
6LSS|1|2|C|2805
6LSS|1|2|A|2806
6LSS|1|2|A|2807
*
6LSS|1|2|U|2819
6LSS|1|2|C|2820
6LSS|1|2|U|2821
6LSS|1|2|G|2822

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain F

60S ribosomal protein L34

Chain a

60S ribosomal protein L19