J3_6LSS_011

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LSS_011 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1287

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6LSS|1|2|C|3937
6LSS|1|2|G|3938
6LSS|1|2|G|3939
*
6LSS|1|2|C|4074
6LSS|1|2|U|4075
6LSS|1|2|G|4076
6LSS|1|2|A|4077
6LSS|1|2|C|4078
*
6LSS|1|2|G|4168
6LSS|1|2|G|4169
6LSS|1|2|A|4170
6LSS|1|2|C|4171
6LSS|1|2|A|4172
6LSS|1|2|G|4173

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8