J3_6LSS_025
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUC
- Length
- 21 nucleotides
- Bulged bases
- 6LSS|1|2|U|4374
- QA status
- Modified nucleotides: 5MC, OMG, MHG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LSS_025 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0883
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6LSS|1|2|G|4228
6LSS|1|2|U|4229
6LSS|1|2|C|4230
*
6LSS|1|2|G|4331
6LSS|1|2|C|4332
6LSS|1|2|C|4333
6LSS|1|2|U|4334
6LSS|1|2|5MC|4335
6LSS|1|2|A|4336
6LSS|1|2|C|4337
6LSS|1|2|G|4338
6LSS|1|2|A|4339
6LSS|1|2|U|4340
6LSS|1|2|C|4341
6LSS|1|2|C|4342
*
6LSS|1|2|OMG|4370
6LSS|1|2|MHG|4371
6LSS|1|2|U|4372
6LSS|1|2|G|4373
6LSS|1|2|U|4374
6LSS|1|2|C|4375
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L27a
- Chain W
- 60S ribosomal protein L36a
- Chain Z
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L21
Coloring options: