J3_6LU8_007

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6LU8|1|2|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LU8_007 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0833

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6LU8|1|2|C|2393
6LU8|1|2|G|2394
6LU8|1|2|A|2395
6LU8|1|2|A|2396
6LU8|1|2|G|2397
6LU8|1|2|U|2398
6LU8|1|2|G|2399
*
6LU8|1|2|C|2805
6LU8|1|2|A|2806
6LU8|1|2|A|2807
*
6LU8|1|2|U|2819
6LU8|1|2|C|2820
6LU8|1|2|U|2821
6LU8|1|2|G|2822

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

Nucleolar GTP-binding protein 1

Chain F

60S ribosomal protein L34

Chain a

60S ribosomal protein L19