J3_6LU8_026

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

6LU8|1|2|U|4882, 6LU8|1|2|A|4938, 6LU8|1|2|C|4940, 6LU8|1|2|A|4943, 6LU8|1|2|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LU8|1|2|G|4751
6LU8|1|2|U|4752
6LU8|1|2|U|4753
6LU8|1|2|G|4754
*
6LU8|1|2|C|4879
6LU8|1|2|C|4880
6LU8|1|2|U|4881
6LU8|1|2|U|4882
6LU8|1|2|C|4883
*
6LU8|1|2|G|4936
6LU8|1|2|C|4937
6LU8|1|2|A|4938
6LU8|1|2|C|4939
6LU8|1|2|C|4940
6LU8|1|2|G|4941
6LU8|1|2|C|4942
6LU8|1|2|A|4943
6LU8|1|2|C|4944
6LU8|1|2|G|4945
6LU8|1|2|U|4946
6LU8|1|2|U|4947
6LU8|1|2|C|4948

Current chains

Chain 2

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain n

60S ribosomal protein L35a

Chain o

60S ribosomal protein L6