J3_8GLP_036

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8GLP|1|L5|U|4882, 8GLP|1|L5|A|4938, 8GLP|1|L5|C|4940, 8GLP|1|L5|A|4943, 8GLP|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8GLP|1|L5|G|4751
8GLP|1|L5|U|4752
8GLP|1|L5|U|4753
8GLP|1|L5|G|4754
*
8GLP|1|L5|C|4879
8GLP|1|L5|C|4880
8GLP|1|L5|U|4881
8GLP|1|L5|U|4882
8GLP|1|L5|C|4883
*
8GLP|1|L5|G|4936
8GLP|1|L5|C|4937
8GLP|1|L5|A|4938
8GLP|1|L5|C|4939
8GLP|1|L5|C|4940
8GLP|1|L5|G|4941
8GLP|1|L5|C|4942
8GLP|1|L5|A|4943
8GLP|1|L5|C|4944
8GLP|1|L5|G|4945
8GLP|1|L5|U|4946
8GLP|1|L5|U|4947
8GLP|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a